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  • Top cofit genes for GFF3960 from Variovorax sp. SCN45

    3'-to-5' oligoribonuclease (orn)
    SEED: 3'-to-5' oligoribonuclease (orn)
    KEGG: oligoribonuclease

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4454 Exoribonuclease II (EC 3.1.13.1) no 0.86
    2 GFF2523 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) no 0.86
    3 GFF399 3'-to-5' exoribonuclease RNase R 0.49 0.85
    4 GFF6634 DNA mismatch repair protein MutS 0.86 0.82
    5 GFF3845 Ribonuclease E (EC 3.1.26.12) no 0.82
    6 GFF5318 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) no 0.80
    7 GFF2815 Primosomal replication protein N no 0.80
    8 GFF5384 Proteins containing SET domain no 0.79
    9 GFF4557 Dihydroorotase (EC 3.5.2.3) no 0.79
    10 GFF2852 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) no 0.78
    11 GFF4398 Transcriptional regulator, AcrR family no 0.78
    12 GFF3905 Aconitate hydratase 2 (EC 4.2.1.3) no 0.77
    13 GFF7291 Magnesium and cobalt transport protein CorA no 0.77
    14 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I no 0.76
    15 GFF3649 C-type cytochrome biogenesis protein ResA (thioredoxin) no 0.76
    16 GFF990 LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) no 0.76
    17 GFF2909 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) no 0.76
    18 GFF497 Phytoene synthase (EC 2.5.1.32) 0.49 0.76
    19 GFF3118 Membrane alanine aminopeptidase N (EC 3.4.11.2) 0.83 0.76
    20 GFF2845 5'-nucleotidase SurE (EC 3.1.3.5) 0.50 0.75

    Or look for negative cofitness