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  • Top cofit genes for GFF3934 from Variovorax sp. SCN45

    PhnB protein
    SEED: PhnB protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5778 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) no 0.61
    2 GFF6442 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.58
    3 GFF556 no description no 0.57
    4 GFF4414 Conjugative transfer protein TrbB no 0.57
    5 GFF7049 hypothetical protein no 0.56
    6 GFF7109 BUG/TctC family periplasmic protein no 0.55
    7 GFF2326 Transcriptional regulator, LysR family no 0.54
    8 GFF2136 Ribokinase (EC 2.7.1.15) no 0.51
    9 GFF3563 L-carnitine dehydratase/bile acid-inducible protein F no 0.51
    10 GFF1010 hypothetical protein no 0.50
    11 GFF2293 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) no 0.50
    12 GFF4610 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8) no 0.49
    13 GFF1110 Recombination protein RecR no 0.49
    14 GFF1171 Transcriptional regulator, AraC family no 0.48
    15 GFF214 Putative transmembrane protein no 0.48
    16 GFF1646 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching no 0.48
    17 GFF5452 no description no 0.47
    18 GFF4216 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.47
    19 GFF6902 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.47
    20 GFF7270 Altronate dehydratase (EC 4.2.1.7) no 0.47

    Or look for negative cofitness