Top cofit genes for GFF393 from Hydrogenophaga sp. GW460-11-11-14-LB1

Sensor histidine kinase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF394		transcriptional regulator, LuxR family	no	0.85
2	GFF1337		Type IV pilus biogenesis protein PilM	no	0.79
3	GFF1333		Type IV pilus biogenesis protein PilQ	no	0.77
4	GFF2566		Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits	no	0.76
5	GFF596		Two-component sensor PilS	no	0.76
6	GFF1335		Type IV pilus biogenesis protein PilO	no	0.76
7	GFF4101		Fumarate hydratase class II (EC 4.2.1.2)	no	0.73
8	GFF4786		Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3)	no	0.72
9	GFF551		FIG00931886: hypothetical protein	no	0.71
10	GFF1280		Type IV fimbrial assembly protein PilC	no	0.71
11	GFF4785		Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3)	no	0.71
12	GFF1336		Type IV pilus biogenesis protein PilN	no	0.71
13	GFF1334		Type IV pilus biogenesis protein PilP	no	0.71
14	GFF2732		Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-)	no	0.71
15	GFF2468		Guanine-specific ribonuclease N1 and T1 precursor	no	0.70
16	GFF1725		Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)	no	0.70
17	GFF438		PROBABLE ANTIBIOTIC-RESISTANCE PROTEIN	no	0.69
18	GFF747		Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB	no	0.68
19	GFF1472		Regulatory protein, LuxR:Response regulator receiver	no	0.66
20	GFF824		FIG140336: TPR domain protein	no	0.66

Or look for negative cofitness