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  • Top cofit genes for GFF3886 from Variovorax sp. SCN45

    Putative transmembrane protein
    SEED: Translation initiation factor 2
    KEGG: uncharacterized membrane protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.97
    2 GFF5417 hypothetical protein no 0.97
    3 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.97
    4 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.97
    5 GFF5415 Type IV fimbrial biogenesis protein PilV no 0.96
    6 GFF5319 Type IV pilus biogenesis protein PilM no 0.96
    7 GFF5419 Type IV pilus biogenesis protein PilE no 0.96
    8 GFF2509 Type IV fimbrial assembly protein PilC no 0.96
    9 GFF3068 FIG00538108: hypothetical protein no 0.96
    10 GFF993 Type IV pilus biogenesis protein PilF no 0.96
    11 GFF5321 Type IV pilus biogenesis protein PilO no 0.96
    12 GFF2155 Signal transduction histidine kinase CheA no 0.96
    13 GFF5323 Type IV pilus biogenesis protein PilQ no 0.96
    14 GFF4432 Two-component system response regulator protein no 0.96
    15 GFF6075 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB no 0.95
    16 GFF5490 Uncharacterized protein with LysM domain, COG1652 no 0.95
    17 GFF5414 hypothetical protein no 0.95
    18 GFF5322 Type IV pilus biogenesis protein PilP no 0.95
    19 GFF5320 Type IV pilus biogenesis protein PilN no 0.95
    20 GFF33 Type IV pilus biogenesis protein PilZ no 0.95

    Or look for negative cofitness