Top cofit genes for GFF3885 from Variovorax sp. SCN45

tRNA pseudouridine(38-40) synthase (EC 5.4.99.12)
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: tRNA pseudouridine synthase A

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF6388		Transcriptional regulator, AcrR family	no	0.74
2	GFF3067		Nitrogen regulation protein NtrB (EC 2.7.13.3)	0.49	0.73
3	GFF4635		Transketolase, N-terminal section (EC 2.2.1.1)	no	0.72
4	GFF6198		D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83)	no	0.72
5	GFF7064		Glutamate--cysteine ligase (EC 6.3.2.2)	0.76	0.71
6	GFF490		Cell division trigger factor (EC 5.2.1.8)	0.79	0.71
7	GFF7376		Transcriptional regulator, LysR family	no	0.70
8	GFF3546		Chaperone protein HtpG	0.54	0.70
9	GFF1773		D-amino acid dehydrogenase (EC 1.4.99.6)	0.73	0.70
10	GFF2499		ATP/GTP-binding protein	0.40	0.70
11	GFF4611		Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	no	0.69
12	GFF4803		N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	no	0.68
13	GFF5443		Glutamine synthetase adenylyl-L-tyrosine phosphorylase (EC 2.7.7.89) / Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)	0.49	0.68
14	GFF1900		Transcriptional regulator, LysR family	no	0.68
15	GFF6195		ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines)	no	0.68
16	GFF343		Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	0.43	0.68
17	GFF559		FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	0.61	0.68
18	GFF5404		N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	0.53	0.67
19	GFF5701		FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8)	0.61	0.67
20	GFF3599		Rhodanese-related sulfurtransferase	no	0.67

Or look for negative cofitness