Top cofit genes for GFF3883 from Hydrogenophaga sp. GW460-11-11-14-LB1

23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)
SEED: 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)
KEGG: RNA methyltransferase, TrmA family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF1742		Phenylalanine-4-hydroxylase (EC 1.14.16.1)	0.34	0.59
2	GFF1723		3-ketoacyl-CoA thiolase (EC 2.3.1.16)	0.64	0.59
3	GFF3971		DNA topoisomerase III (EC 5.99.1.2)	no	0.56
4	GFF2936		Proposed lipoate regulatory protein YbeD	0.37	0.56
5	GFF4509		Biopolymer transport protein ExbD/TolR	0.32	0.56
6	GFF4600		3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	no	0.56
7	GFF5146		Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8)	0.55	0.55
8	GFF3357		tRNA pseudouridine synthase A (EC 4.2.1.70)	0.81	0.55
9	GFF1741		4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	0.23	0.55
10	GFF5445		33 kDa chaperonin (Heat shock protein 33) (HSP33)	0.63	0.54
11	GFF3933		membrane protein, putative	0.51	0.54
12	GFF1709		Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	0.50	0.54
13	GFF2560		hypothetical protein	no	0.54
14	GFF3415		Kynureninase (EC 3.7.1.3)	0.46	0.53
15	GFF716		Glyoxalase family protein	no	0.53
16	GFF1716		Transcriptional regulator, AraC family	no	0.52
17	GFF2559		hypothetical protein	no	0.51
18	GFF2018		tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	0.36	0.51
19	GFF3825		3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like	0.20	0.51
20	GFF1378		OsmC/Ohr family protein	0.53	0.50

Or look for negative cofitness