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  • Top cofit genes for GFF3877 from Variovorax sp. SCN45

    Uncharacterized chaperone protein YegD
    SEED: Putative heat shock protein YegD
    KEGG: hypothetical chaperone protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2830 Uncharacterized protein CC_3061 0.68 0.62
    2 GFF3931 Protein sirB1 no 0.61
    3 GFF266 RND efflux system, inner membrane transporter no 0.59
    4 GFF1316 Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12) 0.46 0.58
    5 GFF375 hypothetical protein 0.35 0.58
    6 GFF3893 hypothetical protein no 0.57
    7 GFF983 hypothetical protein no 0.57
    8 GFF3880 Cell division integral membrane protein, YggT and half-length relatives 0.28 0.56
    9 GFF2521 FIG00931781: hypothetical protein no 0.56
    10 GFF5329 SAM-dependent methyltransferase no 0.56
    11 GFF4426 Homolog of eukaryotic DNA ligase III no 0.55
    12 GFF5018 Uncharacterized protein YpeB no 0.55
    13 GFF6873 Aminotransferase, DegT/DnrJ/EryC1/StrS family 0.77 0.55
    14 GFF3917 Ferrous iron transporter FeoB 0.29 0.55
    15 GFF5860 no description no 0.54
    16 GFF969 ATP-dependent protease HslVU (ClpYQ), peptidase subunit no 0.53
    17 GFF4422 Conjugative transfer protein TrbG no 0.53
    18 GFF5002 ABC-type branched-chain amino acid transport systems, periplasmic component no 0.52
    19 GFF3758 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) no 0.52
    20 GFF5020 Tripartite tricarboxylate transporter TctB family no 0.52

    Or look for negative cofitness