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  • Top cofit genes for GFF3863 from Variovorax sp. SCN45

    RNA polymerase sigma factor RpoE
    SEED: RNA polymerase sigma factor RpoE
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1023 UPF0311 protein RPA1785 no 0.53
    2 GFF2752 FIG00974677: hypothetical protein no 0.51
    3 GFF1313 Cellulose synthase operon protein C no 0.50
    4 GFF7053 Transcriptional regulator, LysR family no 0.50
    5 GFF4799 hypothetical protein 0.64 0.50
    6 GFF5860 no description no 0.50
    7 GFF517 no description no 0.49
    8 GFF6276 Uncharacterized MFS-type transporter no 0.49
    9 GFF3285 ATP-dependent Clp protease ATP-binding subunit ClpA no 0.49
    10 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) no 0.48
    11 GFF5020 Tripartite tricarboxylate transporter TctB family no 0.48
    12 GFF973 PQQ-dependent oxidoreductase, gdhB family 0.81 0.47
    13 GFF5313 Protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 0.47
    14 GFF6359 FIG01219766: hypothetical protein no 0.47
    15 GFF3244 Spermidine synthase N-terminal extension / Spermidine synthase (EC 2.5.1.16) no 0.47
    16 GFF6111 Oligopeptide ABC transporter, ATP-binding protein OppF (TC 3.A.1.5.1) no 0.46
    17 GFF5026 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) no 0.45
    18 GFF5750 Flagellar M-ring protein FliF 0.60 0.45
    19 GFF4238 no description no 0.45
    20 GFF3815 FIG00347597: hypothetical protein no 0.45

    Or look for negative cofitness