Top cofit genes for GFF3854 from Hydrogenophaga sp. GW460-11-11-14-LB1

Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8)
SEED: Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8)
KEGG: peptidyl-prolyl cis-trans isomerase D

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF826		hypothetical protein	0.36	0.53
2	GFF1281		Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-)	no	0.53
3	GFF2491		Extracellular protease precursor (EC 3.4.21.-)	no	0.53
4	GFF5154		Type IV fimbrial biogenesis protein FimT	no	0.52
5	GFF4213		FIG00932012: hypothetical protein	no	0.50
6	GFF5158		Type IV fimbrial biogenesis protein PilY1	no	0.49
7	GFF5155		Type IV fimbrial biogenesis protein PilV	no	0.47
8	GFF5156		Type IV fimbrial biogenesis protein PilW	no	0.47
9	GFF4664		Type IV pilus biogenesis protein PilZ	no	0.45
10	GFF2572		Uncharacterized protein with LysM domain, COG1652	0.48	0.45
11	GFF1503		hypothetical protein	no	0.44
12	GFF4762		Glycosyltransferase (EC 2.4.1.-)	no	0.44
13	GFF2728		diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)	no	0.44
14	GFF2508		FIG00576366: hypothetical protein	0.40	0.44
15	GFF2367		hypothetical protein	no	0.43
16	GFF2721		Twitching motility protein PilT	no	0.43
17	GFF5033		Alkanesulfonates transport system permease protein	0.35	0.43
18	GFF2761		protein of unknown function DUF1501	no	0.43
19	GFF4865		Type IV pilus biogenesis protein PilF	0.56	0.42
20	GFF3904		FIG019175: putative membrane protein	no	0.42

Or look for negative cofitness