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  • Top cofit genes for PS417_01960 from Pseudomonas simiae WCS417

    pilus assembly protein
    SEED: Type IV pilus biogenesis protein PilM

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_26320 ABC transporter permease no 0.22
    2 PS417_09690 sugar dehydrogenase no 0.22
    3 PS417_17510 histidine kinase no 0.19
    4 PS417_25775 lipoprotein no 0.18
    5 PS417_21945 RNA polymerase subunit sigma-24 0.12 0.18
    6 PS417_18790 amino acid transporter LysE 0.50 0.17
    7 PS417_28265 pyridoxamine kinase no 0.17
    8 PS417_04315 superoxide dismutase 0.11 0.17
    9 PS417_01670 Fe-S-oxidoreductase no 0.16
    10 PS417_12610 RNA polymerase sigma factor no 0.16
    11 PS417_20700 cbb3-type cytochrome c oxidase subunit I no 0.16
    12 PS417_05235 peptidase inhibitor I42 no 0.16
    13 PS417_22120 aldose epimerase no 0.16
    14 PS417_05975 chemotaxis protein CheW no 0.15
    15 PS417_03940 membrane protein no 0.15
    16 PS417_04690 transcriptional regulator no 0.15
    17 PS417_02145 potassium transporter KefA no 0.15
    18 PS417_26150 acyltransferase 0.43 0.15
    19 PS417_03070 LuxR family transcriptional regulator no 0.15
    20 PS417_14960 ATPase no 0.15

    Or look for negative cofitness