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Cofit
Protein
Homologs
Top cofit genes for GFF3845 from
Variovorax sp. SCN45
Ribonuclease E (EC 3.1.26.12)
SEED: Ribonuclease E (EC 3.1.26.12)
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF1159
Acetolactate synthase small subunit (EC 2.2.1.6)
no
0.83
2
GFF3960
3'-to-5' oligoribonuclease (orn)
no
0.82
3
GFF2141
GTP-binding and nucleic acid-binding protein YchF
no
0.82
4
GFF4454
Exoribonuclease II (EC 3.1.13.1)
no
0.82
5
GFF6129
(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)
no
0.81
6
GFF2523
Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297)
no
0.81
7
GFF4398
Transcriptional regulator, AcrR family
no
0.80
8
GFF399
3'-to-5' exoribonuclease RNase R
no
0.79
9
GFF5384
Proteins containing SET domain
no
0.79
10
GFF4557
Dihydroorotase (EC 3.5.2.3)
no
0.79
11
GFF213
tmRNA-binding protein SmpB
no
0.79
12
GFF4437
Low-complexity acidic protein, XCC2875 type
no
0.79
13
GFF2499
ATP/GTP-binding protein
no
0.78
14
GFF1917
ATP-dependent RNA helicase Bcep18194_A5658
no
0.78
15
GFF4006
DNA polymerase I (EC 2.7.7.7)
no
0.78
16
GFF575
Tol-Pal system protein TolQ
no
0.78
17
GFF2852
Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8)
no
0.77
18
GFF292
Tol-Pal system beta propeller repeat protein TolB
no
0.77
19
GFF487
ATP-dependent protease La (EC 3.4.21.53) Type I
no
0.77
20
GFF6634
DNA mismatch repair protein MutS
no
0.77
Or look for
negative cofitness