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  • Top cofit genes for GFF3844 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Chromosome initiation inhibitor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4397 hypothetical protein no 0.58
    2 GFF2388 hypothetical protein no 0.57
    3 GFF1292 Macrolide-specific efflux protein MacA no 0.57
    4 GFF7371 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) no 0.57
    5 GFF1796 NADP-dependent malic enzyme (EC 1.1.1.40) no 0.57
    6 GFF7374 FIG00984748: hypothetical protein no 0.56
    7 GFF304 Ubiquinone/menaquinone biosynthesis methyltransferase family protein no 0.55
    8 GFF5028 hypothetical protein no 0.54
    9 GFF7375 Arginine:pyruvate transaminase no 0.54
    10 GFF4389 Type IV secretory pathway, VirD2 components (relaxase) no 0.54
    11 GFF5856 Outer membrane receptor proteins, likely involved in siderophore uptake no 0.54
    12 GFF6852 Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system no 0.53
    13 GFF3080 no description no 0.52
    14 GFF259 Bis-ABC ATPase YheS 0.39 0.52
    15 GFF5957 Uncharacterized MFS-type transporter no 0.52
    16 GFF2516 hypothetical protein no 0.51
    17 GFF7146 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster no 0.51
    18 GFF765 hypothetical protein no 0.51
    19 GFF1719 Transcriptional regulator, LysR family no 0.51
    20 GFF6333 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) no 0.51

    Or look for negative cofitness