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  • Top cofit genes for GFF3822 from Variovorax sp. SCN45

    RND efflux system, membrane fusion protein
    SEED: RND efflux system, membrane fusion protein CmeA
    KEGG: membrane fusion protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1448 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.56
    2 GFF1049 low-specificity D-threonine aldolase no 0.54
    3 GFF252 Zinc-type alcohol dehydrogenase-like protein no 0.54
    4 GFF4328 hypothetical protein no 0.54
    5 GFF5374 Glutamine amidotransferase, class I no 0.54
    6 GFF2617 no description no 0.54
    7 GFF2687 Protein containing domains DUF404, DUF407, DUF403 no 0.53
    8 GFF156 Glycosyl transferase, group 2 family no 0.52
    9 GFF6006 BUG/TctC family periplasmic protein no 0.52
    10 GFF3836 Cyclic beta-1,2-glucan synthase (EC 2.4.1.-) no 0.52
    11 GFF4660 hypothetical protein no 0.51
    12 GFF1373 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) no 0.51
    13 GFF3414 Fumarylacetoacetase (EC 3.7.1.2) no 0.51
    14 GFF6938 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.51
    15 GFF4950 ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) no 0.51
    16 GFF978 Propionate--CoA ligase (EC 6.2.1.17) no 0.51
    17 GFF972 no description no 0.51
    18 GFF5636 Molybdenum ABC transporter, substrate-binding protein ModA no 0.50
    19 GFF5392 no description no 0.50
    20 GFF6284 Cytochrome b561 no 0.49

    Or look for negative cofitness