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  • Top cofit genes for GFF3820 from Variovorax sp. SCN45

    Efflux transport system, outer membrane factor (OMF) lipoprotein
    SEED: RND efflux system, outer membrane lipoprotein CmeC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3709 ABC transporter, substrate-binding protein (cluster 11, riboflavin/purine nucleoside/unknown) no 0.61
    2 GFF4270 Transcriptional regulator, AcrR family no 0.60
    3 GFF3039 Two-component transcriptional response regulator, LuxR family no 0.56
    4 GFF3267 RNA-binding protein no 0.56
    5 GFF2502 O-antigen acetylase no 0.55
    6 GFF6116 MlrC no 0.54
    7 GFF1922 Acyl-CoA dehydrogenase no 0.52
    8 GFF1398 Transcriptional regulator, LacI family no 0.52
    9 GFF522 RND efflux system, inner membrane transporter no 0.51
    10 GFF5958 FIG00537018: hypothetical protein no 0.51
    11 GFF2231 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) no 0.49
    12 GFF4180 hypothetical protein no 0.49
    13 GFF7149 4-hydroxyproline epimerase (EC 5.1.1.8) no 0.49
    14 GFF3811 Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC no 0.49
    15 GFF1352 Probable glutathione s-transferase protein (EC 2.5.1.18) no 0.49
    16 GFF3133 hypothetical protein no 0.49
    17 GFF1605 no description no 0.49
    18 GFF2207 Flp pilus assembly protein TadB no 0.49
    19 GFF4279 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-) no 0.49
    20 GFF1558 Uncharacterized ATP-dependent DNA helicase PA3272 no 0.49

    Or look for negative cofitness