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  • Top cofit genes for PS417_19555 from Pseudomonas simiae WCS417

    RNA polymerase sigma70
    SEED: Sigma factor PvdS, controling pyoverdin biosynthesis
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_04075 peptide ABC transporter substrate-binding protein no 0.33
    2 PS417_24155 ATP-binding protein no 0.31
    3 PS417_19560 amino acid ABC transporter substrate-binding protein 0.14 0.31
    4 PS417_11445 enoyl-CoA hydratase no 0.30
    5 PS417_11450 AraC family transcriptional regulator no 0.30
    6 PS417_26020 transcriptional initiation protein Tat no 0.29
    7 PS417_27260 iron ABC transporter permease no 0.29
    8 PS417_20665 hypothetical protein no 0.28
    9 PS417_04860 ATPase 0.29 0.27
    10 PS417_25715 anthranilate phosphoribosyltransferase 0.51 0.27
    11 PS417_20985 porin no 0.26
    12 PS417_18560 N-(5'-phosphoribosyl)anthranilate isomerase 0.52 0.26
    13 PS417_17640 macrolide ABC transporter ATP-binding protein 0.33 0.26
    14 PS417_00185 tryptophan synthase subunit beta 0.46 0.26
    15 PS417_01600 peptidase M23 no 0.25
    16 PS417_25710 indole-3-glycerol-phosphate synthase 0.51 0.25
    17 PS417_01855 phosphoribosyl-AMP cyclohydrolase 0.40 0.24
    18 PS417_04070 porin no 0.24
    19 PS417_22825 hypothetical protein 0.58 0.24
    20 PS417_23110 2-isopropylmalate synthase 0.50 0.24

    Or look for negative cofitness