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Cofit
Protein
Homologs
Top cofit genes for GFF379 from
Sphingobium sp. HT1-2
Tim44-like domain protein
SEED: Transporter
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4162
Cell wall hydrolyses involved in spore germination
no
0.89
2
GFF2283
Quinone oxidoreductase (EC 1.6.5.5)
no
0.89
3
GFF4115
DNA-3-methyladenine glycosylase (EC 3.2.2.20)
no
0.87
4
GFF1660
NADP-dependent malic enzyme (EC 1.1.1.40)
no
0.87
5
GFF1678
Ferredoxin, 2Fe-2S
no
0.86
6
GFF1186
Nitrate ABC transporter, substrate-binding protein
no
0.85
7
GFF1275
Lysophospholipid transporter LplT
no
0.84
8
GFF4227
dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)
no
0.84
9
GFF1150
tRNA-dihydrouridine synthase DusB
no
0.84
10
GFF2248
Inner membrane component of TAM transport system
no
0.84
11
GFF2596
hypothetical protein
no
0.83
12
GFF2286
ATP-dependent Clp protease ATP-binding subunit ClpA
0.46
0.83
13
GFF143
PhbF
no
0.83
14
GFF3097
Inner membrane component of TAM transport system
no
0.82
15
GFF3325
YdcF-like protein
no
0.82
16
GFF3462
Transcriptional regulator, LysR family
no
0.82
17
GFF776
RNA polymerase sigma-54 factor RpoN
0.47
0.81
18
GFF1746
Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydD subunit
no
0.81
19
GFF148
ATP-dependent protease subunit HslV (EC 3.4.25.2)
no
0.81
20
GFF788
Phytoene desaturase (lycopene-forming) (EC 1.3.99.31)
no
0.81
Or look for
negative cofitness