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  • Top cofit genes for GFF3736 from Variovorax sp. SCN45

    UPF0102 protein YraN
    SEED: Predicted endonuclease distantly related to archaeal Holliday junction resolvase
    KEGG: putative endonuclease

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2953 Transcriptional regulator, AraC family no 0.56
    2 GFF6318 Uncharacterized MFS-type transporter 0.47 0.52
    3 GFF58 Tyrosine-protein kinase (EC 2.7.10.2) 0.35 0.51
    4 GFF6010 MmgE/PrpD family protein no 0.50
    5 GFF3811 Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC no 0.50
    6 GFF7218 no description 0.60 0.50
    7 GFF7242 hypothetical protein no 0.48
    8 GFF7412 no description 0.60 0.48
    9 GFF3982 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) no 0.47
    10 GFF5803 Urea ABC transporter, ATPase protein UrtE 0.24 0.47
    11 GFF815 COGs COG3777 no 0.45
    12 GFF7069 Transcriptional regulator no 0.45
    13 GFF1916 YpfJ protein, zinc metalloprotease superfamily 0.23 0.44
    14 GFF6964 Cytochrome c oxidase (cbb3-type) subunit CcoN (EC 1.9.3.1) no 0.44
    15 GFF1513 Cytochrome c551/c552 no 0.44
    16 GFF3448 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.44
    17 GFF697 FIG074102: hypothetical protein no 0.43
    18 GFF4366 BUG/TctC family periplasmic protein no 0.43
    19 GFF6169 Na(+) H(+) antiporter subunit F 0.33 0.43
    20 GFF7161 Transcriptional regulator, LysR family no 0.43

    Or look for negative cofitness