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  • Top cofit genes for GFF3729 from Variovorax sp. SCN45

    Transcriptional regulator, AraC family
    SEED: Transcriptional regulator, AraC family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3495 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) 0.18 0.67
    2 GFF940 Permease of the drug/metabolite transporter (DMT) superfamily no 0.58
    3 GFF5831 Ketosteroid isomerase-related protein no 0.56
    4 GFF3263 Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family no 0.54
    5 GFF4360 no description no 0.54
    6 GFF5636 Molybdenum ABC transporter, substrate-binding protein ModA no 0.53
    7 GFF6858 no description no 0.52
    8 GFF1520 Transcriptional regulator, IclR family no 0.51
    9 GFF3091 Septum-associated cell division protein DedD no 0.50
    10 GFF178 Mannonate dehydratase (EC 4.2.1.8) 0.85 0.50
    11 GFF6006 BUG/TctC family periplasmic protein no 0.49
    12 GFF4672 Exoenzymes regulatory protein AepA precursor 0.29 0.49
    13 GFF2205 hypothetical protein no 0.49
    14 GFF5919 KEGG: type VI secretion system secreted protein Hcp no 0.48
    15 GFF763 Transporter, LysE family no 0.47
    16 GFF1019 monooxygenase, FAD-binding no 0.47
    17 GFF348 Superoxide dismutase [Fe] (EC 1.15.1.1) no 0.47
    18 GFF4843 Conjugative transfer protein TrbF no 0.47
    19 GFF3634 hypothetical protein no 0.47
    20 GFF5247 hypothetical protein no 0.47

    Or look for negative cofitness