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Cofit
Protein
Homologs
Top cofit genes for PS417_18945 from
Pseudomonas simiae WCS417
endoribonuclease
SEED: Bona fide RidA/YjgF/TdcF/RutC subgroup
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PS417
_19560
amino acid ABC transporter substrate-binding protein
no
0.45
2
PS417
_10720
chemotaxis protein CheY
no
0.41
3
PS417
_16370
chemotaxis protein CheY
0.24
0.41
4
PS417
_28265
pyridoxamine kinase
no
0.38
5
PS417
_16160
ABC transporter substrate-binding protein
no
0.35
6
PS417
_09665
dimethylglycine dehydrogenase
no
0.35
7
PS417
_24885
transcriptional regulator
no
0.33
8
PS417
_05985
chemotaxis protein CheY
no
0.33
9
PS417
_06365
RNA polymerase sigma factor
no
0.32
10
PS417
_19145
membrane protein
no
0.32
11
PS417
_05975
chemotaxis protein CheW
no
0.32
12
PS417
_11445
enoyl-CoA hydratase
no
0.32
13
PS417
_03725
acyltransferase
no
0.31
14
PS417
_13940
racemase
0.27
0.31
15
PS417
_12610
RNA polymerase sigma factor
no
0.31
16
PS417
_22190
diguanylate cyclase
no
0.31
17
PS417
_05070
serine/threonine protein kinase
0.61
0.30
18
PS417
_23950
polynucleotide phosphorylase/polyadenylase
no
0.30
19
PS417
_21040
sulfurylase
no
0.30
20
PS417
_11450
AraC family transcriptional regulator
no
0.29
Or look for
negative cofitness