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  • Top cofit genes for GFF3697 from Variovorax sp. SCN45

    ATP-dependent DNA ligase (EC 6.5.1.1) LigC
    SEED: ATP-dependent DNA ligase (EC 6.5.1.1) LigC
    KEGG: DNA ligase (ATP)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6225 ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates) no 0.53
    2 GFF958 ElaB protein no 0.51
    3 GFF2187 ATPase associated with various cellular activities, AAA_5 no 0.51
    4 GFF6415 ATP-dependent DNA helicase RecQ 0.65 0.51
    5 GFF25 Alcohol dehydrogenase (EC 1.1.1.1) 0.61 0.50
    6 GFF2078 hypothetical protein no 0.50
    7 GFF872 Hemin ABC transporter, permease protein no 0.49
    8 GFF2290 Chromosome partitioning protein ParA no 0.49
    9 GFF1269 no description no 0.49
    10 GFF4665 no description no 0.49
    11 GFF7139 MATE efflux family protein no 0.48
    12 GFF5533 hypothetical protein no 0.48
    13 GFF5850 Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68) 0.28 0.48
    14 GFF674 no description no 0.48
    15 GFF5648 ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates) no 0.48
    16 GFF5994 Chlorogenate esterase no 0.48
    17 GFF1679 Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9) no 0.48
    18 GFF718 AraC-type DNA-binding domain-containing proteins no 0.47
    19 GFF1433 hypothetical protein no 0.47
    20 GFF6121 FIG003461: hypothetical protein no 0.47

    Or look for negative cofitness