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Cofit
Protein
Homologs
Top cofit genes for GFF3696 from
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Integrase
SEED: Integrase
KEGG: integrase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4036
tRNA-Ser-CGA
no
0.66
2
GFF4533
Transcriptional regulatory protein CitB, DpiA
no
0.65
3
GFF4846
tRNA pseudouridine synthase C (EC 4.2.1.70)
0.43
0.64
4
GFF2979
VapC toxin protein
no
0.64
5
GFF2746
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
no
0.63
6
GFF1237
FIG01046247: hypothetical protein
no
0.62
7
GFF2319
FIG01046148: hypothetical protein
no
0.62
8
GFF3919
secreted effector protein
no
0.62
9
GFF2039
Putative cytochrome oxidase
no
0.62
10
GFF3697
Phage excisionase
no
0.62
11
GFF1333
Serine transporter
no
0.62
12
GFF1240
Virulence genes transcriptional activator
no
0.61
13
GFF204
Electron transfer flavoprotein, beta subunit FixA
0.39
0.60
14
GFF3065
A/G-specific adenine glycosylase (EC 3.2.2.-)
no
0.60
15
GFF1340
FIG036507: Fimbriae usher protein StdB
no
0.60
16
GFF2645
Ethidium bromide-methyl viologen resistance protein EmrE
no
0.59
17
GFF465
Long polar fimbria protein A precursor
no
0.59
18
GFF3120
Cystathionine beta-lyase (EC 4.4.1.8)
no
0.59
19
GFF98
FIG100795: Fimbriae usher protein StiC
no
0.59
20
GFF1795
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
no
0.59
Or look for
negative cofitness