Top cofit genes for GFF3661 from Sphingobium sp. HT1-2

D-alanine--D-alanine ligase (EC 6.3.2.4)
SEED: D-alanine--D-alanine ligase (EC 6.3.2.4)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF1839		Transcriptional regulator, LysR family	no	0.81
2	GFF1442		Glycosyl transferase, group 1	no	0.73
3	GFF5028		Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25)	no	0.71
4	GFF5322		hypothetical protein	no	0.70
5	GFF2552		hypothetical protein	no	0.70
6	GFF4877		Isohexenylglutaconyl-CoA hydratase (EC 4.2.1.57)	no	0.69
7	GFF4384		hypothetical protein	no	0.68
8	GFF4507		hypothetical protein	no	0.66
9	GFF1334		Recombinase	no	0.66
10	GFF5344		Mobile element protein	no	0.65
11	GFF3377		hypothetical protein	no	0.65
12	GFF3918		Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT	no	0.65
13	GFF2297		hypothetical protein	no	0.64
14	GFF2648		hypothetical protein	no	0.64
15	GFF2692		hypothetical protein	no	0.64
16	GFF3046		hypothetical protein	no	0.64
17	GFF2505		Carbonic anhydrase, beta class (EC 4.2.1.1)	no	0.64
18	GFF1584		hypothetical protein	no	0.63
19	GFF2039		RNA polymerase ECF-type sigma factor	no	0.63
20	GFF1478		Oxidoreductase, short-chain dehydrogenase/reductase family	no	0.63

Or look for negative cofitness