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  • Top cofit genes for GFF3647 from Variovorax sp. SCN45

    Cytochrome b
    SEED: Ni,Fe-hydrogenase I cytochrome b subunit

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4420 Conjugative transfer protein TrbL no 0.60
    2 GFF959 Phage holin no 0.60
    3 GFF5626 Patatin no 0.59
    4 GFF7084 Mobile element protein no 0.59
    5 GFF4112 Rhodanese-related sulfurtransferase, 4 domains no 0.54
    6 GFF3272 Inner membrane protein, KefB/KefC family no 0.52
    7 GFF5746 Flagellar protein FliJ no 0.52
    8 GFF6024 Pyrophosphatase, MutT/nudix family (EC 3.6.1.-) no 0.51
    9 GFF476 InterPro IPR005134 COGs COG2862 no 0.50
    10 GFF6099 Ser/Thr protein phosphatase family protein no 0.50
    11 GFF918 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) no 0.49
    12 GFF1518 3-dehydroquinate dehydratase II (EC 4.2.1.10) no 0.49
    13 GFF6215 no description no 0.49
    14 GFF882 Outer membrane porin no 0.48
    15 GFF3238 no description no 0.48
    16 GFF6276 Uncharacterized MFS-type transporter no 0.48
    17 GFF5545 Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) no 0.48
    18 GFF3921 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) no 0.47
    19 GFF3295 Endonuclease/exonuclease/phosphatase family protein no 0.47
    20 GFF6347 AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination no 0.47

    Or look for negative cofitness