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  • Top cofit genes for GFF3579 from Variovorax sp. SCN45

    probable iron-sulfur binding protein YPO1417
    SEED: probable iron-sulfur binding protein YPO1417

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2000 Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) 0.53 0.66
    2 GFF2567 Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) no 0.64
    3 GFF2316 FIG015547: peptidase, M16 family no 0.61
    4 GFF2711 hypothetical protein no 0.61
    5 GFF1187 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) no 0.61
    6 GFF5672 Dna binding response regulator PrrA (RegA) 0.31 0.61
    7 GFF2025 Uncharacterized protein SCO3165 no 0.61
    8 GFF6224 T6SS component TssK (ImpJ/VasE) no 0.60
    9 GFF2572 Protein-export protein SecB (maintains pre-export unfolded state) no 0.59
    10 GFF1917 ATP-dependent RNA helicase Bcep18194_A5658 no 0.59
    11 GFF1372 Uncharacterized MFS-type transporter no 0.59
    12 GFF6107 Zinc transporter, ZIP family 0.42 0.58
    13 GFF6083 hypothetical protein PA3071 no 0.58
    14 GFF1188 Thiazole synthase (EC 2.8.1.10) 0.18 0.58
    15 GFF1256 Probable NADH dehydrogenase/NAD(P)H nitroreductase no 0.58
    16 GFF3755 Transcriptional regulator, GntR family no 0.57
    17 GFF816 L-carnitine dehydratase/bile acid-inducible protein F no 0.57
    18 GFF6704 no description no 0.57
    19 GFF6031 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) no 0.57
    20 GFF6032 Branched-chain amino acid ABC transporter, permease protein LivM (TC 3.A.1.4.1) no 0.57

    Or look for negative cofitness