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  • Top cofit genes for GFF3572 from Variovorax sp. SCN45

    Efflux ABC transporter, permease protein
    SEED: ABC-type multidrug transport system, permease component
    KEGG: lipooligosaccharide transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1880 Previously called glutamate synthase [NADPH] small chain no 0.61
    2 GFF6135 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.54
    3 GFF6652 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) no 0.53
    4 GFF1625 Transcriptional regulator, LysR family no 0.52
    5 GFF6490 Uncharacterized conserved protein YfiP, contains DTW domain no 0.51
    6 GFF564 hypothetical protein no 0.50
    7 GFF4620 Gluconolactonase (EC 3.1.1.17) no 0.50
    8 GFF2589 no description no 0.49
    9 GFF3693 Oxidoreductase 0.58 0.48
    10 GFF6395 hypothetical protein no 0.48
    11 GFF7186 NAD-dependent protein deacetylase of SIR2 family no 0.48
    12 GFF6687 hypothetical protein no 0.47
    13 GFF5779 L-idonate 5-dehydrogenase (EC 1.1.1.264) no 0.47
    14 GFF5132 no description no 0.47
    15 GFF7004 Flagellar biosynthesis protein FlhA no 0.47
    16 GFF5026 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) no 0.46
    17 GFF5533 hypothetical protein no 0.45
    18 GFF25 Alcohol dehydrogenase (EC 1.1.1.1) 0.29 0.45
    19 GFF6457 no description no 0.44
    20 GFF563 Type IV fimbrial biogenesis protein PilY1 no 0.44

    Or look for negative cofitness