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  • Top cofit genes for GFF3567 from Variovorax sp. SCN45

    YihE protein, required for LPS synthesis
    SEED: YihE protein, required for LPS synthesis

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3111 hypothetical protein no 0.51
    2 GFF7000 Flagellar L-ring protein FlgH no 0.50
    3 GFF4719 hypothetical protein no 0.49
    4 GFF6374 predicted 2-keto-3-deoxyxylonate dehydratase no 0.49
    5 GFF3535 Aquaporin Z 0.67 0.48
    6 GFF78 Cytochrome c family protein no 0.48
    7 GFF3187 hypothetical protein no 0.46
    8 GFF5135 DNA repair exonuclease family protein YhaO no 0.45
    9 GFF5978 Nucleoside 2-deoxyribosyltransferase no 0.45
    10 GFF3972 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.45
    11 GFF5433 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.44
    12 GFF6747 Glycosyl transferase, family 2 0.13 0.44
    13 GFF606 BUG/TctC family periplasmic protein no 0.43
    14 GFF6000 hypothetical protein no 0.42
    15 GFF7201 Alkanesulfonates transport system permease protein no 0.42
    16 GFF4770 Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA no 0.42
    17 GFF2341 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) no 0.42
    18 GFF827 Predicted cobalt transporter CbtC no 0.42
    19 GFF3186 FIG01046500: hypothetical protein no 0.42
    20 GFF3831 Acetyltransferase, GNAT family no 0.41

    Or look for negative cofitness