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  • Top cofit genes for GFF3566 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Chromosome initiation inhibitor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1597 Acetolactate synthase large subunit (EC 2.2.1.6) no 0.67
    2 GFF7062 probable carboxylesterase no 0.64
    3 GFF6821 ribonuclease H no 0.62
    4 GFF7212 Nitrilotriacetate monooxygenase [FMNH2] no 0.62
    5 GFF4203 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative no 0.61
    6 GFF4967 Glutathione S-transferase family protein no 0.60
    7 GFF6334 no description no 0.60
    8 GFF4214 L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 2 AapM no 0.60
    9 GFF1951 no description no 0.59
    10 GFF2571 Glutaredoxin 3 (Grx3) 0.63 0.58
    11 GFF6083 hypothetical protein PA3071 no 0.56
    12 GFF4023 no description no 0.55
    13 GFF2431 RNA polymerase ECF-type sigma factor no 0.55
    14 GFF4550 NAD(FAD)-utilizing dehydrogenase, sll0175 homolog no 0.54
    15 GFF132 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.54
    16 GFF1542 Anti-sigma B factor RsbT / Phosphoserine phosphatase RsbX (EC 3.1.3.3) no 0.54
    17 GFF633 Urea ABC transporter, ATPase protein UrtD no 0.54
    18 GFF3434 Organic hydroperoxide resistance protein no 0.54
    19 GFF85 Transcriptional regulator, LysR family no 0.53
    20 GFF4918 hypothetical protein no 0.53

    Or look for negative cofitness