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Cofit
Protein
Homologs
Top cofit genes for GFF3556 from
Variovorax sp. SCN45
BUG/TctC family periplasmic protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4564
hypothetical protein
no
0.58
2
GFF3450
Transcriptional regulator, LacI family
no
0.58
3
GFF6839
hypothetical protein
no
0.55
4
GFF5814
Rhodanese-related sulfurtransferase
no
0.53
5
GFF2920
TRAP-type C4-dicarboxylate transport system, large permease component
no
0.53
6
GFF7139
MATE efflux family protein
no
0.53
7
GFF4776
Broad-specificity amino acid ABC transporter, substrate-binding protein
no
0.52
8
GFF5310
Cytochrome c4
no
0.51
9
GFF864
no description
no
0.51
10
GFF5983
Transcriptional regulator, LysR family
no
0.51
11
GFF6684
ABC transporter, ATP-binding protein
no
0.50
12
GFF5976
Transcriptional regulator, AraC family
no
0.50
13
GFF3468
Nucleoside-diphosphate-sugar epimerases
no
0.49
14
GFF6403
Stresses-induced protein Ves (HutD)
no
0.49
15
GFF7134
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
no
0.49
16
GFF4482
Transcriptional regulator MraZ
no
0.49
17
GFF2237
Intracellular protease
no
0.48
18
GFF933
YgfD: protein that forms a complex with the methylmalonyl-CoA mutase in a pathway for conversion of succinyl-CoA to propionyl-CoA
no
0.48
19
GFF4246
FIG00464377: hypothetical protein
no
0.48
20
GFF3027
T6SS component TssK (ImpJ/VasE)
no
0.47
Or look for
negative cofitness