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  • Top cofit genes for GFF3537 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2747 17 kDa surface antigen no 0.55
    2 GFF7117 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) no 0.53
    3 GFF2147 no description no 0.52
    4 GFF4650 Transcriptional regulator, PadR family no 0.52
    5 GFF4714 putative lipoprotein no 0.51
    6 GFF4720 Putrescine transport system permease protein potI no 0.50
    7 GFF7140 FIG00349159: hypothetical protein no 0.50
    8 GFF5013 Citronellyl-CoA dehydrogenase no 0.49
    9 GFF5917 T6SS component TssB (ImpB/VipA) 0.39 0.48
    10 GFF6002 DNA topoisomerase IB (poxvirus type) (EC 5.99.1.2) no 0.48
    11 GFF4663 no description no 0.47
    12 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) 0.21 0.47
    13 GFF3820 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.47
    14 GFF6473 hypothetical protein no 0.46
    15 GFF5848 Flagellar motor protein no 0.46
    16 GFF4674 Amidohydrolase family protein no 0.46
    17 GFF7083 Mobile element protein no 0.46
    18 GFF5621 ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.46
    19 GFF321 hypothetical protein no 0.46
    20 GFF5101 Dihydroxy-acid dehydratase (EC 4.2.1.9) no 0.46

    Or look for negative cofitness