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  • Top cofit genes for GFF3508 from Variovorax sp. SCN45

    Multidrug efflux system, outer membrane factor lipoprotein => OpmD of MexHI-OpmD system
    SEED: RND efflux system, outer membrane lipoprotein CmeC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3874 Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) no 0.69
    2 GFF6463 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.66
    3 GFF3525 Protein tyrosine/serine phosphatase no 0.66
    4 GFF7390 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.63
    5 GFF4288 Acyl-CoA dehydrogenase no 0.63
    6 GFF2032 Excinuclease ABC subunit A, dimeric form no 0.63
    7 GFF1737 Carbon starvation protein A 0.24 0.62
    8 GFF7256 Dehydratase, IlvD/Edd family 0.31 0.62
    9 GFF4277 Small subunit naph/bph dioxygenase no 0.61
    10 GFF7043 Putative transmembrane protein no 0.61
    11 GFF1790 Hydroxymethylpyrimidine ABC transporter, ATPase component no 0.61
    12 GFF5468 FAD/FMN-containing dehydrogenase no 0.61
    13 GFF3071 ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13) no 0.60
    14 GFF3789 hypothetical protein no 0.59
    15 GFF1542 Anti-sigma B factor RsbT / Phosphoserine phosphatase RsbX (EC 3.1.3.3) 0.25 0.59
    16 GFF4064 no description no 0.59
    17 GFF3979 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-) no 0.59
    18 GFF5879 LemA no 0.58
    19 GFF4774 Broad-specificity amino acid ABC transporter, ATP-binding protein 2 no 0.58
    20 GFF3090 Colicin V production protein no 0.58

    Or look for negative cofitness