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  • Top cofit genes for GFF350 from Variovorax sp. SCN45

    Ferric siderophore transport system, biopolymer transport protein ExbB
    SEED: Ferric siderophore transport system, biopolymer transport protein ExbB
    KEGG: biopolymer transport protein ExbB

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF734 no description no 0.64
    2 GFF5186 hypothetical protein no 0.62
    3 GFF6723 Cysteine desulfurase (EC 2.8.1.7) no 0.62
    4 GFF3743 Twitching motility protein PilT 0.74 0.58
    5 GFF4439 Probable transmembrane protein no 0.57
    6 GFF3886 Putative transmembrane protein no 0.56
    7 GFF4253 hypothetical protein no 0.56
    8 GFF5415 Type IV fimbrial biogenesis protein PilV 0.75 0.56
    9 GFF2155 Signal transduction histidine kinase CheA no 0.55
    10 GFF3068 FIG00538108: hypothetical protein 0.77 0.54
    11 GFF501 hypothetical protein no 0.54
    12 GFF5321 Type IV pilus biogenesis protein PilO 0.76 0.53
    13 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.53
    14 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.53
    15 GFF332 hypothetical protein no 0.53
    16 GFF2509 Type IV fimbrial assembly protein PilC 0.76 0.53
    17 GFF33 Type IV pilus biogenesis protein PilZ 0.75 0.53
    18 GFF5417 hypothetical protein no 0.53
    19 GFF6290 RNA polymerase sigma-54 factor RpoN 0.52 0.53
    20 GFF5320 Type IV pilus biogenesis protein PilN 0.77 0.53

    Or look for negative cofitness