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  • Top cofit genes for GFF3480 from Sphingobium sp. HT1-2

    ATP-dependent RNA helicase Atu1833
    SEED: ATP-dependent RNA helicase Atu1833

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1715 hypothetical protein 0.55 0.95
    2 GFF2792 hypothetical protein no 0.94
    3 GFF1149 Nitrogen regulation protein NtrB (EC 2.7.13.3) no 0.92
    4 GFF147 ATP-dependent hsl protease ATP-binding subunit HslU no 0.92
    5 GFF240 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.91
    6 GFF1148 Nitrogen regulation protein NR(I), GlnG (=NtrC) 0.28 0.91
    7 GFF2007 Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated no 0.91
    8 GFF2286 ATP-dependent Clp protease ATP-binding subunit ClpA 0.34 0.91
    9 GFF646 Aspartate aminotransferase (EC 2.6.1.1) 0.36 0.91
    10 GFF2597 Quinohemoprotein amine dehydrogenase gamma subunit (EC 1.4.99.-) no 0.91
    11 GFF776 RNA polymerase sigma-54 factor RpoN no 0.90
    12 GFF1275 Lysophospholipid transporter LplT no 0.90
    13 GFF1520 Protein containing domains DUF404, DUF407 no 0.90
    14 GFF785 Ammonium transporter no 0.90
    15 GFF3352 TonB-dependent receptor no 0.89
    16 GFF1150 tRNA-dihydrouridine synthase DusB no 0.89
    17 GFF3759 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) 0.46 0.89
    18 GFF4227 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) no 0.88
    19 GFF2791 Two-component system sensor histidine kinase no 0.88
    20 GFF2594 Efflux ABC transporter, permease/ATP-binding protein no 0.87

    Or look for negative cofitness