Top cofit genes for GFF3479 from Hydrogenophaga sp. GW460-11-11-14-LB1

Type IV secretory pathway, VirD2 components (relaxase)
SEED: Type IV secretory pathway, VirD2 components (relaxase)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF3835		Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)	no	0.50
2	GFF1002		MmgE/PrpD family protein	no	0.46
3	GFF5657		Mesaconyl-CoA C1-C4 CoA transferase	no	0.44
4	GFF3738		hypothetical protein	no	0.43
5	GFF5427		hypothetical protein	no	0.42
6	GFF1250		Transporter	no	0.42
7	GFF640		Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7)	no	0.40
8	GFF2362		hypothetical protein	no	0.40
9	GFF1206		Benzoate-CoA ligase (EC 6.2.1.25)	no	0.40
10	GFF4774		Lipopolysaccharide biosynthesis chain length determinant protein	no	0.39
11	GFF49		hypothetical protein	no	0.39
12	GFF1741		4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)	no	0.39
13	GFF4693		Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)	no	0.38
14	GFF2897		Enoyl-CoA hydratase (EC 4.2.1.17)	no	0.38
15	GFF57		hypothetical protein	no	0.38
16	GFF677		FIG00433688: hypothetical protein	no	0.37
17	GFF2992		D-hydantoinase (EC 3.5.2.2)	no	0.37
18	GFF4691		Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein	no	0.37
19	GFF2019		NADPH:quinone oxidoreductase	no	0.37
20	GFF1423		hypothetical protein	no	0.37

Or look for negative cofitness