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Cofit
Protein
Homologs
Top cofit genes for GFF3477 from
Sphingobium sp. HT1-2
UPF0758 family protein
SEED: DNA repair protein RadC
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF3420
Acetyltransferase
no
0.92
2
GFF3519
General secretion pathway protein D
no
0.81
3
GFF60
Pyruvate,phosphate dikinase (EC 2.7.9.1)
no
0.79
4
GFF5056
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
no
0.79
5
GFF1921
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
no
0.78
6
GFF362
Sensory box/GGDEF family protein
no
0.77
7
GFF1920
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
no
0.76
8
GFF754
Carboxyl-terminal protease (EC 3.4.21.102)
no
0.76
9
GFF2463
Membrane protein
no
0.75
10
GFF4057
Monofunctional biosynthetic peptidoglycan transglycosylase
no
0.75
11
GFF4093
SSU rRNA ## 16S rRNA, small subunit ribosomal RNA
no
0.74
12
GFF1464
TonB-dependent receptor
no
0.74
13
GFF3027
HoxN/HupN/NixA family nickel/cobalt transporter
no
0.73
14
GFF3631
ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate)
no
0.73
15
GFF3099
hypothetical protein
no
0.73
16
GFF2710
Type II restriction enzyme PaeR7I (EC 3.1.21.4)
no
0.72
17
GFF4688
L-alanine-DL-glutamate epimerase (EC 5.1.1.n1)
no
0.72
18
GFF5045
hypothetical protein
no
0.72
19
GFF4151
Thiazole tautomerase TenI (EC 5.3.99.10)
no
0.72
20
GFF5345
Type I restriction-modification system, specificity subunit S
no
0.71
Or look for
negative cofitness