Top cofit genes for GFF3455 from Variovorax sp. SCN45

Two component response regulator associated with urea and amide use
SEED: DNA-binding heavy metal response regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF623		Demethylmenaquinone methyltransferase-like protein	no	0.58
2	GFF131		L-glyceraldehyde 3-phosphate reductase	no	0.57
3	GFF6110		N-acyl-D-amino-acid deacylase (EC 3.5.1.81)	no	0.57
4	GFF4509		no description	no	0.55
5	GFF6123		ABC-type antimicrobial peptide transport system, ATPase component	no	0.51
6	GFF3606		Similarities with probable transcriptional regulator LumQ	no	0.51
7	GFF2435		FIG138928: iron-regulated membrane protein	no	0.50
8	GFF3080		no description	no	0.50
9	GFF1185		Transcriptional regulator, AraC family	no	0.48
10	GFF4981		Cysteine desulfurase (EC 2.8.1.7)	no	0.48
11	GFF4253		hypothetical protein	no	0.48
12	GFF2426		ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)	no	0.48
13	GFF6640		ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines)	no	0.47
14	GFF2194		Tol-Pal system peptidoglycan-associated lipoprotein PAL	no	0.47
15	GFF5772		Flagellar biosynthesis protein FlhF	no	0.46
16	GFF1503		Dihydrofolate reductase homolog	no	0.46
17	GFF5195		L-arabinose ABC transporter, ATP-binding protein AraG	no	0.46
18	GFF6854		RNA polymerase ECF-type sigma factor	no	0.46
19	GFF2532		Potassium efflux system KefA protein / Small-conductance mechanosensitive channel	no	0.45
20	GFF7212		Nitrilotriacetate monooxygenase [FMNH2]	0.19	0.45

Or look for negative cofitness