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  • Top cofit genes for PS417_17630 from Pseudomonas simiae WCS417

    RNA polymerase sigma factor
    SEED: Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_11700 ligand-gated channel 0.69 0.26
    2 PS417_02155 chemotaxis protein no 0.23
    3 PS417_21710 Succinylornithine transaminase (EC 2.6.1.81) (from data) 0.45 0.21
    4 PS417_03940 membrane protein no 0.20
    5 PS417_22195 peptidase 0.66 0.20
    6 PS417_10445 LysR family transcriptional regulator no 0.20
    7 PS417_11280 HxcX atypical pseudopilin no 0.20
    8 PS417_05210 copper oxidase 0.54 0.19
    9 PS417_22735 thiol oxidoreductase 0.58 0.19
    10 PS417_22740 imelysin 0.27 0.19
    11 PS417_02340 LysR family transcriptional regulator no 0.19
    12 PS417_05025 maleylacetoacetate isomerase 0.50 0.18
    13 PS417_22745 hypothetical protein 0.45 0.18
    14 PS417_24780 peptidase C13 no 0.18
    15 PS417_26565 LysR family transcriptional regulator no 0.18
    16 PS417_11630 sodium:dicarboxylate symporter no 0.18
    17 PS417_25635 biotin--protein ligase no 0.18
    18 PS417_02880 copper chaperone 0.24 0.18
    19 PS417_05560 ABC transporter no 0.17
    20 PS417_10800 caspase-1, p20 no 0.17

    Or look for negative cofitness