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  • Top cofit genes for GFF3442 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

    Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)
    SEED: Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)
    KEGG: peptide/nickel transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1383 FIG00639790: hypothetical protein no 0.62
    2 GFF1444 hypothetical protein no 0.60
    3 GFF125 hypothetical protein no 0.60
    4 GFF3255 UPF0319 protein YccT precursor no 0.55
    5 GFF4643 hypothetical protein no 0.54
    6 GFF2179 Glycine cleavage system transcriptional antiactivator GcvR no 0.54
    7 GFF3094 D-mannonate oxidoreductase (EC 1.1.1.57) no 0.53
    8 GFF4091 FIG034929: Fimbriae usher protein SafC no 0.53
    9 GFF2686 Phage shock protein A no 0.52
    10 GFF324 PTS system, mannose-specific IIA component no 0.50
    11 GFF206 L-carnitine/gamma-butyrobetaine antiporter no 0.50
    12 GFF3744 O-antigen acetylase no 0.49
    13 GFF1055 Phosphoserine phosphatase (EC 3.1.3.3) no 0.49
    14 GFF1627 DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS no 0.49
    15 GFF1543 DNA-invertase no 0.48
    16 GFF2518 Putative dehydrogenase protein no 0.48
    17 GFF3265 Pathogenicity island encoded protein: SPI3 no 0.47
    18 GFF3313 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) no 0.47
    19 GFF4219 glycerol dehyrdratase activator no 0.47
    20 GFF3714 Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown no 0.47

    Or look for negative cofitness