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  • Top cofit genes for GFF3430 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Glycine cleavage system transcriptional activator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4039 Heavy metal RND efflux outer membrane protein, CzcC family no 0.48
    2 GFF1306 no description no 0.48
    3 GFF1092 Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1) no 0.47
    4 GFF5915 T6SS secretion lipoprotein TssJ (VasD) no 0.45
    5 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) no 0.44
    6 GFF5785 FIG00931285: hypothetical protein no 0.44
    7 GFF4680 tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase (EC 2.1.1.200) no 0.43
    8 GFF7278 Transposase no 0.43
    9 GFF6255 Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase (EC 3.6.1.63) no 0.43
    10 GFF7335 no description no 0.43
    11 GFF835 Two-component system sensor histidine kinase no 0.42
    12 GFF2631 Transcriptional regulator, ArsR family no 0.42
    13 GFF3444 BUG/TctC family periplasmic protein no 0.41
    14 GFF1208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.41
    15 GFF583 Tripartite tricarboxylate transporter TctB family no 0.41
    16 GFF4914 Luciferase-like monooxygenase YhbW no 0.40
    17 GFF3352 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) no 0.40
    18 GFF2968 MaoC-like dehydratase no 0.40
    19 GFF4615 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase no 0.40
    20 GFF2623 Aspartate aminotransferase no 0.39

    Or look for negative cofitness