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  • Top cofit genes for GFF3414 from Variovorax sp. SCN45

    Fumarylacetoacetase (EC 3.7.1.2)
    SEED: Fumarylacetoacetase (EC 3.7.1.2)
    KEGG: fumarylacetoacetase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF178 Mannonate dehydratase (EC 4.2.1.8) no 0.65
    2 GFF1598 no description no 0.65
    3 GFF3495 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.65
    4 GFF859 Lactoylglutathione lyase (EC 4.4.1.5) no 0.63
    5 GFF5965 hypothetical protein no 0.63
    6 GFF101 Phosphate-binding DING protein (related to PstS) no 0.61
    7 GFF371 RNA-binding protein YhbY no 0.60
    8 GFF109 Protein lysine acetyltransferase Pat (EC 2.3.1.-) no 0.59
    9 GFF1393 hypothetical protein no 0.58
    10 GFF7003 Flagellar basal-body rod protein FlgF no 0.57
    11 GFF6006 BUG/TctC family periplasmic protein no 0.57
    12 GFF1644 hypothetical protein no 0.57
    13 GFF7115 hypothetical protein no 0.56
    14 GFF3301 Lignostilbene-alpha,beta-dioxygenase and related enzymes no 0.55
    15 GFF2189 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) no 0.55
    16 GFF4098 hypothetical protein no 0.55
    17 GFF2713 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.54
    18 GFF4129 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.54
    19 GFF3986 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.53
    20 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA no 0.53

    Or look for negative cofitness