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  • Top cofit genes for PS417_17420 from Pseudomonas simiae WCS417

    ethanol oxidation regulatory protein ercA (from data)
    Original annotation: alcohol dehydrogenase
    SEED: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_17435 dehydrogenase 0.64 0.78
    2 PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE 0.76 0.78
    3 PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF 0.67 0.77
    4 PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC 0.70 0.76
    5 PS417_17415 histidine kinase 0.80 0.76
    6 PS417_17495 multidrug ABC transporter permease 0.64 0.73
    7 PS417_17485 membrane protein 0.65 0.71
    8 PS417_17480 branched-chain amino acid ABC transporter substrate-binding protein 0.62 0.69
    9 PS417_17425 hypothetical protein no 0.68
    10 PS417_17450 amino acid ABC transporter substrate-binding protein 0.56 0.66
    11 PS417_21750 acetyl-CoA synthetase 0.43 0.65
    12 PS417_19965 histidine kinase 0.34 0.63
    13 PS417_16570 isocitrate lyase 0.53 0.62
    14 PS417_17505 LuxR family transcriptional regulator 0.82 0.61
    15 PS417_17455 cytochrome C 0.80 0.61
    16 PS417_17460 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) 0.81 0.56
    17 PS417_17490 ABC transporter ATP-binding protein 0.55 0.55
    18 PS417_26040 malate synthase 0.37 0.53
    19 PS417_24765 membrane protein no 0.53
    20 PS417_05840 LuxR family transcriptional regulator no 0.45

    Or look for negative cofitness