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  • Top cofit genes for GFF3402 from Variovorax sp. SCN45

    no description

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3226 no description no 0.61
    2 GFF2161 Dihydroorotase (EC 3.5.2.3) no 0.58
    3 GFF6832 DnaJ-class molecular chaperone CbpA no 0.55
    4 GFF5178 Transcriptional regulator, Xre-family with cupin domain no 0.55
    5 GFF4950 ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) no 0.53
    6 GFF1487 Tetrapartite efflux system component, FusD-like no 0.53
    7 GFF2664 FIG002343: hypothetical protein no 0.52
    8 GFF911 KEGG: transcriptional regulator no 0.52
    9 GFF3403 Benzoate catabolism regulator with shikimate kinase domain no 0.52
    10 GFF1366 Uncharacterized MFS-type transporter no 0.52
    11 GFF5454 Transcriptional regulator, AsnC family no 0.51
    12 GFF6732 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) no 0.50
    13 GFF4994 Acyl-CoA-binding protein no 0.50
    14 GFF881 Transcriptional regulator ligR, LysR family no 0.49
    15 GFF2107 no description no 0.49
    16 GFF2334 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.49
    17 GFF2466 no description no 0.49
    18 GFF88 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) no 0.49
    19 GFF774 no description no 0.49
    20 GFF2557 transport-associated no 0.48

    Or look for negative cofitness