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  • Top cofit genes for GFF3399 from Variovorax sp. SCN45

    Benzoate--CoA ligase (EC 6.2.1.25)
    SEED: Benzoate-CoA ligase (EC 6.2.1.25)
    KEGG: benzoate-CoA ligase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2208 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily no 0.54
    2 GFF4896 Integrase no 0.52
    3 GFF1753 LysR family transcriptional regulator lrhA 0.35 0.51
    4 GFF5586 Acetoin dehydrogenase E1 component beta-subunit (EC 2.3.1.190) no 0.51
    5 GFF1551 hypothetical protein no 0.50
    6 GFF3386 hypothetical protein no 0.48
    7 GFF3820 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.48
    8 GFF1831 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 no 0.48
    9 GFF4231 no description no 0.47
    10 GFF6409 Histidine ammonia-lyase (EC 4.3.1.3) no 0.47
    11 GFF5094 BUG/TctC family periplasmic protein no 0.46
    12 GFF6343 no description no 0.46
    13 GFF80 no description no 0.46
    14 GFF1790 Hydroxymethylpyrimidine ABC transporter, ATPase component no 0.45
    15 GFF5437 Amine oxidase, flavin-containing no 0.45
    16 GFF4084 hypothetical protein no 0.45
    17 GFF4270 Transcriptional regulator, AcrR family no 0.44
    18 GFF3553 FOG: TPR repeat no 0.44
    19 GFF2426 ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) no 0.44
    20 GFF3777 Prolyl endopeptidase (EC 3.4.21.26) 0.30 0.44

    Or look for negative cofitness