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  • Top cofit genes for GFF3393 from Variovorax sp. SCN45

    Benzoate ABC transporter, ATP-binding protein 2
    SEED: Benzoate transport, ATP binding protein
    KEGG: branched-chain amino acid transport system ATP-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6599 NAD-dependent formate dehydrogenase alpha subunit no 0.58
    2 GFF7248 no description no 0.56
    3 GFF3997 Short-chain dehydrogenase/reductase SDR no 0.55
    4 GFF2721 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.53
    5 GFF6321 Ferrichrome-iron receptor no 0.52
    6 GFF7149 4-hydroxyproline epimerase (EC 5.1.1.8) no 0.52
    7 GFF4849 Conjugative transfer protein TrbB no 0.50
    8 GFF1947 no description no 0.48
    9 GFF879 BUG/TctC family periplasmic protein no 0.48
    10 GFF5436 Hypothetical protein COG3496 no 0.48
    11 GFF6755 hypothetical protein no 0.48
    12 GFF921 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) no 0.48
    13 GFF6738 Uncharacterized aldehyde oxidase, molybdopterin-binding subunit no 0.48
    14 GFF5844 Phospholipase A1 (EC 3.1.1.32) (EC 3.1.1.4) @ Outer membrane phospholipase A no 0.48
    15 GFF2215 L,D-transpeptidase no 0.48
    16 GFF3231 hypothetical protein no 0.47
    17 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.47
    18 GFF5118 gluconolactonase family protein no 0.47
    19 GFF4033 no description no 0.47
    20 GFF5687 FIG01027591: hypothetical protein no 0.47

    Or look for negative cofitness