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  • Top cofit genes for GFF3392 from Variovorax sp. SCN45

    Transcriptional regulator, AraC family
    KEGG: AraC family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7386 no description no 0.53
    2 GFF5397 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.51
    3 GFF4433 1,6-anhydro-N-acetylmuramyl-L-alanine amidase no 0.51
    4 GFF3348 Putative lipase no 0.50
    5 GFF3300 hypothetical protein no 0.49
    6 GFF6479 hypothetical protein no 0.49
    7 GFF2796 Dihydrodipicolinate synthase family protein PP2639 no 0.48
    8 GFF7258 Transcriptional regulator, IclR family no 0.48
    9 GFF6721 Transcriptional regulator, LysR family no 0.48
    10 GFF5927 3-oxoacyl-[ACP] synthase no 0.48
    11 GFF4982 Thiol:disulfide interchange protein DsbC no 0.47
    12 GFF6502 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) no 0.47
    13 GFF6354 T6SS component TssK (ImpJ/VasE) no 0.46
    14 GFF5009 hypothetical protein no 0.46
    15 GFF5517 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) no 0.45
    16 GFF5273 Various polyols ABC transporter, permease protein 1 no 0.45
    17 GFF838 hypothetical protein no 0.45
    18 GFF6112 Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1) no 0.45
    19 GFF7124 Mobile element protein no 0.45
    20 GFF6282 23S rRNA (guanine(2445)-N(2))-methyltransferase (EC 2.1.1.173) no 0.45

    Or look for negative cofitness