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  • Top cofit genes for GFF3381 from Variovorax sp. SCN45

    Broad-specificity amino acid ABC transporter, substrate-binding protein
    SEED: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
    KEGG: branched-chain amino acid transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6579 Conjugative transfer protein TrbB no 0.54
    2 GFF3206 no description no 0.54
    3 GFF5757 hypothetical protein no 0.53
    4 GFF845 dTDP-glucose 4,6-dehydratase no 0.52
    5 GFF2102 no description no 0.51
    6 GFF1178 hypothetical protein no 0.51
    7 GFF3273 Translation initiation factor 2 no 0.50
    8 GFF1185 Transcriptional regulator, AraC family no 0.50
    9 GFF862 hypothetical protein no 0.49
    10 GFF1041 Transcriptional regulator, AsnC family no 0.48
    11 GFF3081 no description no 0.48
    12 GFF6506 DNA-binding protein HU-beta no 0.48
    13 GFF6604 FIG00457034: hypothetical protein no 0.48
    14 GFF2395 D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-) no 0.47
    15 GFF4713 Uncharacterized protein YhiN no 0.47
    16 GFF1175 Two-component system response regulator QseB no 0.46
    17 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis no 0.46
    18 GFF258 Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298) no 0.46
    19 GFF3196 Metallophosphoesterase no 0.46
    20 GFF1479 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.45

    Or look for negative cofitness