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  • Top cofit genes for GFF3375 from Variovorax sp. SCN45

    DNA-binding transcriptional regulator, MocR family / aminotransferase domain
    SEED: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4958 ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.57
    2 GFF3787 Biotin carboxylase (EC 6.3.4.14) no 0.56
    3 GFF4057 Copper/silver efflux RND transporter, membrane fusion protein CusB no 0.53
    4 GFF611 hypothetical protein no 0.52
    5 GFF1865 Transcriptional regulator, AraC family no 0.52
    6 GFF5849 FIG01210206: hypothetical protein no 0.52
    7 GFF2367 Transcriptional regulator, LysR family no 0.51
    8 GFF7221 Protein lysine acetyltransferase Pat (EC 2.3.1.-) no 0.51
    9 GFF6416 hypothetical protein no 0.51
    10 GFF2824 TonB-dependent hemin, ferrichrome receptor no 0.51
    11 GFF2602 no description no 0.51
    12 GFF4345 hypothetical protein no 0.50
    13 GFF5909 Selenophosphate synthetase-related protein MJ0640 no 0.49
    14 GFF128 hypothetical protein no 0.49
    15 GFF5747 Flagellum-specific ATP synthase FliI 0.28 0.49
    16 GFF5031 ABC-type spermidine/putrescine transport systems, ATPase components no 0.48
    17 GFF2859 Excinuclease ABC subunit C no 0.47
    18 GFF6822 Peptidase C14, caspase catalytic subunit p20 no 0.46
    19 GFF7084 Mobile element protein no 0.46
    20 GFF4098 hypothetical protein no 0.46

    Or look for negative cofitness