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  • Top cofit genes for GFF3327 from Variovorax sp. SCN45

    RidA/YER057c/UK114 superfamily, group 1
    SEED: Endoribonuclease L-PSP

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3371 FIG00456413: hypothetical protein no 0.53
    2 GFF6822 Peptidase C14, caspase catalytic subunit p20 no 0.52
    3 GFF2706 VgrG protein no 0.52
    4 GFF1461 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.49
    5 GFF2948 salicylate esterase no 0.49
    6 GFF6639 no description no 0.48
    7 GFF2177 no description no 0.48
    8 GFF287 hypothetical protein no 0.47
    9 GFF3762 hypothetical protein no 0.46
    10 GFF3511 no description no 0.46
    11 GFF4782 Pyridoxal-5'-phosphate-dependent enzyme beta superfamily (fold type II) no 0.45
    12 GFF756 no description no 0.45
    13 GFF1572 Transcriptional regulator, LysR family no 0.45
    14 GFF2419 putative amidase no 0.45
    15 GFF2946 Regulator of competence-specific genes no 0.45
    16 GFF4910 hypothetical protein no 0.45
    17 GFF1793 hypothetical protein no 0.45
    18 GFF5394 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.44
    19 GFF2127 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly no 0.44
    20 GFF5174 Uncharacterized conserved protein no 0.44

    Or look for negative cofitness