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Cofit
Protein
Homologs
Top cofit genes for GFF3293 from
Variovorax sp. SCN45
Inner membrane protein YbhQ
SEED: Inner membrane protein YbhQ
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF6006
BUG/TctC family periplasmic protein
no
0.56
2
GFF5374
Glutamine amidotransferase, class I
no
0.52
3
GFF7386
no description
no
0.50
4
GFF4194
L-carnitine dehydratase/bile acid-inducible protein F
no
0.50
5
GFF532
no description
no
0.50
6
GFF6175
hypothetical protein
no
0.50
7
GFF3495
ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.49
8
GFF4368
Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4)
no
0.49
9
GFF859
Lactoylglutathione lyase (EC 4.4.1.5)
no
0.48
10
GFF1598
no description
no
0.48
11
GFF1393
hypothetical protein
no
0.48
12
GFF7037
Uncharacterized MFS-type transporter
no
0.48
13
GFF3349
Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1)
no
0.47
14
GFF476
InterPro IPR005134 COGs COG2862
0.62
0.47
15
GFF1321
Probable diguanylate cyclase YeaP
0.34
0.46
16
GFF1720
Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2
no
0.46
17
GFF3192
hypothetical protein
no
0.46
18
GFF2262
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
no
0.45
19
GFF6927
Transcriptional regulator, ArsR family
no
0.45
20
GFF3564
BUG/TctC family periplasmic protein
no
0.45
Or look for
negative cofitness