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  • Top cofit genes for GFF3293 from Variovorax sp. SCN45

    Inner membrane protein YbhQ
    SEED: Inner membrane protein YbhQ

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6006 BUG/TctC family periplasmic protein no 0.56
    2 GFF5374 Glutamine amidotransferase, class I no 0.52
    3 GFF7386 no description no 0.50
    4 GFF4194 L-carnitine dehydratase/bile acid-inducible protein F no 0.50
    5 GFF532 no description no 0.50
    6 GFF6175 hypothetical protein no 0.50
    7 GFF3495 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.49
    8 GFF4368 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) no 0.49
    9 GFF859 Lactoylglutathione lyase (EC 4.4.1.5) no 0.48
    10 GFF1598 no description no 0.48
    11 GFF1393 hypothetical protein no 0.48
    12 GFF7037 Uncharacterized MFS-type transporter no 0.48
    13 GFF3349 Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) no 0.47
    14 GFF476 InterPro IPR005134 COGs COG2862 0.62 0.47
    15 GFF1321 Probable diguanylate cyclase YeaP 0.34 0.46
    16 GFF1720 Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2 no 0.46
    17 GFF3192 hypothetical protein no 0.46
    18 GFF2262 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases no 0.45
    19 GFF6927 Transcriptional regulator, ArsR family no 0.45
    20 GFF3564 BUG/TctC family periplasmic protein no 0.45

    Or look for negative cofitness