Top cofit genes for GFF3257 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

hemimethylated DNA binding protein YccV
SEED: hemimethylated DNA binding protein YccV
KEGG: heat shock protein HspQ

Rank Hit Name Description Conserved? Cofitness  
1 GFF2566 Transcriptional regulator, TetR family no 0.75
2 GFF2968 Stringent starvation protein A 0.62 0.73
3 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) no 0.73
4 GFF2016 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) no 0.72
5 GFF2303 Putative uncharacterized protein YiiQ 0.73 0.72
6 GFF3379 FIG004453: protein YceG like no 0.71
7 GFF34 FIG01280259: hypothetical protein no 0.70
8 GFF3533 FIG00638687: hypothetical protein no 0.70
9 GFF4798 Adenylylsulfate kinase (EC 2.7.1.25) no 0.70
10 GFF3054 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC no 0.70
11 GFF1058 NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) no 0.69
12 GFF3887 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) no 0.69
13 GFF3397 Transcription-repair coupling factor no 0.69
14 GFF3874 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) 0.62 0.68
15 GFF4290 DNA recombination-dependent growth factor C 0.36 0.68
16 GFF2051 Predicted transcriptional regulator of pyridoxine metabolism no 0.67
17 GFF3613 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps no 0.67
18 GFF1423 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) no 0.66
19 GFF4837 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 0.46 0.65
20 GFF3886 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) 0.73 0.65

Or look for negative cofitness