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Cofit
Protein
Homologs
Top cofit genes for GFF3256 from
Variovorax sp. SCN45
Peptidase, M20/M25/M40 family
SEED: peptidase M20
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF1152
Lysine decarboxylase family
no
0.59
2
GFF5107
Transcriptional regulator, LysR family
no
0.52
3
GFF1700
hypothetical protein
no
0.50
4
GFF926
Transcriptional regulator, AcrR family
no
0.49
5
GFF5032
ABC-type spermidine/putrescine transport system, permease component I
no
0.49
6
GFF3173
Transcriptional regulator, IclR family
no
0.48
7
GFF5716
Flagellar basal-body rod protein FlgC
no
0.48
8
GFF1296
putative lipoprotein
no
0.47
9
GFF3259
Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23)
no
0.47
10
GFF4433
1,6-anhydro-N-acetylmuramyl-L-alanine amidase
no
0.46
11
GFF627
Secretion protein HlyD
no
0.46
12
GFF706
hypothetical protein
no
0.46
13
GFF888
BUG/TctC family periplasmic protein
no
0.46
14
GFF207
Death on curing protein, Doc toxin
no
0.45
15
GFF2258
4-hydroxybenzoate transporter
no
0.45
16
GFF5161
Glutathione S-transferase (EC 2.5.1.18)
no
0.45
17
GFF3586
ABC-type Fe3+ transport system, periplasmic component
no
0.45
18
GFF1341
ABC transporter, ATP-binding protein 2 RSc1754
no
0.45
19
GFF6465
hypothetical protein
no
0.45
20
GFF2787
Transcriptional regulator PA1859, LysR family
no
0.45
Or look for
negative cofitness