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  • Top cofit genes for GFF3256 from Variovorax sp. SCN45

    Peptidase, M20/M25/M40 family
    SEED: peptidase M20

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1152 Lysine decarboxylase family no 0.59
    2 GFF5107 Transcriptional regulator, LysR family no 0.52
    3 GFF1700 hypothetical protein no 0.50
    4 GFF926 Transcriptional regulator, AcrR family no 0.49
    5 GFF5032 ABC-type spermidine/putrescine transport system, permease component I no 0.49
    6 GFF3173 Transcriptional regulator, IclR family no 0.48
    7 GFF5716 Flagellar basal-body rod protein FlgC no 0.48
    8 GFF1296 putative lipoprotein no 0.47
    9 GFF3259 Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23) no 0.47
    10 GFF4433 1,6-anhydro-N-acetylmuramyl-L-alanine amidase no 0.46
    11 GFF627 Secretion protein HlyD no 0.46
    12 GFF706 hypothetical protein no 0.46
    13 GFF888 BUG/TctC family periplasmic protein no 0.46
    14 GFF207 Death on curing protein, Doc toxin no 0.45
    15 GFF2258 4-hydroxybenzoate transporter no 0.45
    16 GFF5161 Glutathione S-transferase (EC 2.5.1.18) no 0.45
    17 GFF3586 ABC-type Fe3+ transport system, periplasmic component no 0.45
    18 GFF1341 ABC transporter, ATP-binding protein 2 RSc1754 no 0.45
    19 GFF6465 hypothetical protein no 0.45
    20 GFF2787 Transcriptional regulator PA1859, LysR family no 0.45

    Or look for negative cofitness